Datasets:

cmatkhan
/

hfgp-500fg

GeneID stringlengths 1 9 ⌀	geo_accession stringclasses 100 values	value int32 0 226k ⌀
1	GSM3936209	101
10	GSM3936209	0
100	GSM3936209	547
1000	GSM3936209	5
10000	GSM3936209	184
100008586	GSM3936209	0
100008587	GSM3936209	0
100008588	GSM3936209	4,346
100008589	GSM3936209	1,790
100009601	GSM3936209	0
100009602	GSM3936209	0
100009605	GSM3936209	0
100009606	GSM3936209	0
100009607	GSM3936209	0
100009613	GSM3936209	0
100009667	GSM3936209	0
100009676	GSM3936209	30
10001	GSM3936209	394
10002	GSM3936209	1
10003	GSM3936209	8
100033411	GSM3936209	0
100033413	GSM3936209	0
100033414	GSM3936209	0
100033415	GSM3936209	0
100033416	GSM3936209	0
100033417	GSM3936209	0
100033418	GSM3936209	0
100033419	GSM3936209	0
100033420	GSM3936209	0
100033421	GSM3936209	0
100033422	GSM3936209	0
100033423	GSM3936209	0
100033424	GSM3936209	0
100033425	GSM3936209	0
100033426	GSM3936209	0
100033427	GSM3936209	0
100033428	GSM3936209	0
100033429	GSM3936209	0
100033430	GSM3936209	0
100033431	GSM3936209	0
100033432	GSM3936209	0
100033433	GSM3936209	0
100033434	GSM3936209	0
100033435	GSM3936209	0
100033436	GSM3936209	0
100033437	GSM3936209	0
100033438	GSM3936209	0
100033439	GSM3936209	0
100033440	GSM3936209	0
100033441	GSM3936209	0
100033442	GSM3936209	0
100033443	GSM3936209	0
100033444	GSM3936209	0
100033445	GSM3936209	0
100033446	GSM3936209	0
100033447	GSM3936209	0
100033448	GSM3936209	0
100033449	GSM3936209	0
100033450	GSM3936209	0
100033451	GSM3936209	0
100033453	GSM3936209	0
100033454	GSM3936209	0
100033455	GSM3936209	0
100033456	GSM3936209	0
100033458	GSM3936209	0
100033460	GSM3936209	0
100033603	GSM3936209	0
100033799	GSM3936209	0
100033800	GSM3936209	0
100033801	GSM3936209	0
100033802	GSM3936209	0
100033803	GSM3936209	0
100033804	GSM3936209	0
100033805	GSM3936209	0
100033806	GSM3936209	0
100033807	GSM3936209	0
100033808	GSM3936209	0
100033809	GSM3936209	0
100033810	GSM3936209	0
100033811	GSM3936209	0
100033812	GSM3936209	0
100033813	GSM3936209	0
100033814	GSM3936209	0
100033815	GSM3936209	0
100033816	GSM3936209	0
100033817	GSM3936209	0
100033818	GSM3936209	0
100033819	GSM3936209	0
100033820	GSM3936209	0
100033821	GSM3936209	0
100033822	GSM3936209	0
100034743	GSM3936209	2
100036563	GSM3936209	0
100036564	GSM3936209	0
100036565	GSM3936209	0
100036566	GSM3936209	0
100036567	GSM3936209	0
100037417	GSM3936209	288
100038246	GSM3936209	0
10004	GSM3936209	287

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Data Card: 500FG (Human Functional Genomics Project) Whole-Blood RNA-seq Dataset (GSE134080)

Summary

Raw RNA-seq gene expression counts + sample metadata + feature metadata for GSE134080, whole-blood RNA-seq from 100 healthy individuals in the 500FG cohort of the Human Functional Genomics Project (HFGP).

Source accession

Accession	N	Platform	Retrieval source
GSE134080	100 subjects	RNA-seq (polyA), realigned by NCBI to GRCh38.p13	NCBI GEO

Files

sample_metadata.parquet — one row per sample: geo_accession (e.g. GSM...), age, sex
feature_metadata.parquet — one row per gene keyed on GeneID (Entrez Gene ID). Includes Symbol, EnsemblGeneID, and genomic coordinates.
expression.parquet — raw expression data in long format: GeneID, sample_id, value

Provenance / reproducibility

See pull_gse134080.R

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Collection including cmatkhan/hfgp-500fg

Sepsis transcriptomics

Collection

This is a collection of publicly available high throughput transcriptomics datasets • 13 items • Updated 4 days ago