metadata
library_name: transformers
tags: []
See UDEV on starting a Docker with necessary requirements
import torch
from udev.models.amplify.modeling_amplify import AMPLIFY
device = torch.device("cuda") # only cuda is supported
model = AMPLIFY.from_pretrained('GleghornLab/AMPLIFY_350M', token=token).to(device)
tokenizer = EsmTokenizer.from_pretrained('GleghornLab/AMPLIFY_350M', token=token)
sequences = ['SEQWENCE', 'MEAEGAVE'] # list of seqs: str
tokens = tokenizer(sequences, return_tensors='pt', padding=True, pad_to_multiple_of=8)
tokens = {k: v.to(device) for k, v in tokens.items()}
out = model(
src=tokens['input_ids'],
pad_mask=tokens['attention_mask'].float(),
output_hidden_states=True,
output_attentions=True
)